Genetic linkage and QTL mapping experiments involve large volumes of data. These include pedigree details, genotypes and trait data all of which must be combined in different forms to suit the nuances of each analysis program. Such experiments frequently also consist of collaborations between several groups making data sharing and concurrency a key concern. To simplify the handling of such data we have developed resSpecies using funds obtained from the BBSRC.
The resSpecies system is currently being used to support several European and UK-national collaborative QTL mapping projects in addition to The Roslin Institute's national QTL mapping programmes. Although access is currently limited to registered members of the collaborating laboratories, those collaborators represent a significant proportion of the world's livestock genome mappers.
As the results of the analyses are published we hope, with the permission of the data owners, to make the data underpinning each publication available through this site without the hindrance of password-protection.
Current Release: 3.6.3 (5995) (Tue, Apr 29, 2014)
- All reporting and export routines that require the user to select which Markers to act on, now allow the user to list specified Markers via an uploaded file.
- Fixed bugs in the Respecies Inheritance Utilities module and its integration into the WebApp that may have been resulting in failure to correctly identify inconsistent genotypes prior to submission.
- Made recognition of a user's log-in name case-independent.
Adding your data
If you would like to handle your experimental data using the resSpecies system, please contact Andy Law to discuss the possibilities.
Looking for public data?
The resSpecies system handles data for the scientists who plan and execute the experiments and it is they who own the data. Consequently, although we would like to make all the data public in a timely manner, we are reliant on them to give us permission so to do. Since there are no international agreements in place relating to genotype and phenotype data (unlike those in place to cover sequence data), there is little that we can do to make this happen without their agreement.
If you have data that you wish to make public, then we are more than happy for you to do so through the resSpecies system. If you own data already in the system that should be public but is not, then please contact us to let us know. Similarly, if you know that there is data within the system that relates to published work and which should be made public, please contact the authors of the published work and ask them to allow us to make the data freely available.
Until such time as a significant quantity of real data becomes public, you'll have to make do with the data in the Demo species database.